Evidence map›Paper›PMID 42237212›Full record

ArticleBMC molecular and cell biology2026

From microscope to model: rotating signaling dynamics and cluster size in Dictyostelium discoideum aggregates.

Sanchi Saitia, Yi-Chieh Lai, Man-Ho Tang, Jasper Jain, Michael Reiss, Wouter-Jan Rappel

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Article in BMC molecular and cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Sanchi Saitia *Department of Physics, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA.
Yi-Chieh Lai *Department of Physics, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA.
Man-Ho TangDepartment of Physics, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA.
Jasper JainDepartment of Physics, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA.
Michael ReissDepartment of Bioengineering, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA.
Wouter-Jan RappelDepartment of Physics, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA. rappel@physics.ucsd.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhen starved, Dictyostelium discoideum cells form clusters that, when constrained in height, exhibit clear collective rotational motion. During this collective rotation, cells secrete and relay the chemoattractant cAMP, resulting in signal propagation in the form of spiral waves, which rotate in the opposite direction of the collective rotation. The quantification of this collective rotation with reference to cAMP signaling and the dependence on cluster size is currently unclear.

resultsIn this study, we use experiments and modeling to investigate how cell motion and cAMP signaling dynamics depend on cluster sizes in Dictyostelium using aggregates that are confined to quasi-2D environments. For rotating clusters with a single cAMP spiral arm, we find that both cAMP wave and cell angular velocities decrease as cluster sizes increase, suggesting that larger clusters signal more slowly. We also show that the angular velocity of the cells ([Formula: see text]) is linearly correlated with the angular velocity of the cAMP wave ([Formula: see text]). For clusters with multiple spiral arms, we observe a size dependence where larger clusters have a higher probability of having more spiral arms compared to smaller clusters. The qualitative experimental results are consistent with a computational model that couples a reaction diffusion model to cell motility and chemotaxis. Our simulation results suggest that a variable degradation rate of cAMP, which depends on cluster size, is a possible mechanism to explain the cluster size-dependent wave and cell angular velocities.

conclusionTogether, these findings identify cluster size as a key regulator of both cAMP wave dynamics and collective cell motion and link slower signaling and enhanced multi-armed spiral formation to larger clusters. More broadly, our work suggests that size-dependent modulation of extracellular cAMP degradation can couple cell number to emergent spatiotemporal patterns in developing Dictyostelium aggregates.

Indexed as

DictyosteliumModels, BiologicalSignal TransductionCell AggregationCell MovementChemotaxisCyclic AMPRotationCyclic AMPAggregationCell motilityCellular Potts modelCollective motionDictyostelium discoideumFitzHugh-Nagumo modelReaction-diffusion modelSpiral waves

Identifiers

PMID42237212
PMCPMC13449873

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.