Evidence map›Paper›PMID 42314682›Full record

ArticleCell stem cell2026

Quantitative molecular cartography of emergency myelopoiesis reveals conserved modules of hematopoietic activation.

James W Swann, Jun Hou Fung, Ziwei Chen, Oakley C Olson, Amélie Collins, Tenzin Lhakhang, Melissa A Proven, Ruiyuan Zhang, Raul Rabadan, Emmanuelle Passegué

Abstract read
In one paragraph

Article in Cell stem cell, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

James W SwannColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA.
Jun Hou FungProgram for Mathematical Genomics, Department of Biomedical Informatics and Department of Systems Biology, Columbia University, New York, NY 10032, USA.
Ziwei ChenProgram for Mathematical Genomics, Department of Biomedical Informatics and Department of Systems Biology, Columbia University, New York, NY 10032, USA.
Oakley C OlsonColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA.
Amélie CollinsColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA.
Tenzin LhakhangProgram for Mathematical Genomics, Department of Biomedical Informatics and Department of Systems Biology, Columbia University, New York, NY 10032, USA.
Melissa A ProvenColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA.
Ruiyuan ZhangColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA.
Raul RabadanProgram for Mathematical Genomics, Department of Biomedical Informatics and Department of Systems Biology, Columbia University, New York, NY 10032, USA. Electronic address: rr2579@cumc.columbia.edu.
Emmanuelle PasseguéColumbia Stem Cell Initiative, Department of Genetics & Development, Columbia University, New York, NY 10032, USA. Electronic address: ep2828@cumc.columbia.edu.

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Project 3: Role of stromal cell-activated CNOT6L deadenylase in driving AML transformationP01CA285250 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Raul Rabadan · 2024 to 2026
$11.0M
Emergency Myelopoiesis Pathways in the Control of Blood ProductionR35HL135763 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PASSEGUE, EMMANUELLE · 2017 to 2023
$5.7M
Towards a quantitative understanding of tumor evolutionR35CA253126 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Raul Rabadan · 2021 to 2026
$5.6M
Emergency Myelopoiesis in the Control of Blood ProductionR35HL171521 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Emmanuelle Passegue · 2024 to 2026
$3.3M
Emergency Myelopoiesis in the Pathogenesis of Myeloid MalignanciesR01CA255342 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PASSEGUE, EMMANUELLE · 2021 to 2025
$2.7M
NCI NIH HHS P01 CA285250NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA255342NCI NIH HHS R35 CA253126NHLBI NIH HHS R35 HL135763NHLBI NIH HHS R35 HL171521
6 · The paper itself

Abstract

Hematopoietic stem and progenitor cells (HSPCs) respond to infections, inflammation, and regenerative challenges using emergency myelopoiesis (EM) pathways to amplify myeloid cell production. However, it remains unclear how various EM inducers regulate HSPCs using shared or distinct molecular mechanisms. Here, we generate a comprehensive and generalizable cell annotation method (HemaScribe) and a refined quantitative model of hematopoietic differentiation (HemaScape) using single-cell RNA sequencing (scRNA-seq) of murine HSPCs, which we apply to a broad range of EM modalities. We uncover multiple strategies for enhancing myelopoiesis that act at different levels of the HSPC hierarchy and are associated with both unique and shared transcriptional response modules. In particular, we identify a myeloid progenitor-based EM activation module across diverse inflammatory challenges that is conserved in humans and informs outcomes in adult and pediatric acute myeloid leukemia. Our work illuminates fundamental regulatory mechanisms in hematopoietic regeneration that have direct translational applications in disease contexts.

Indexed as

Hematopoietic Stem CellsMyelopoiesisAnimalsCell DifferentiationHumansLeukemia, Myeloid, AcuteMiceacute myeloid leukemiadifferentiationemergency myelopoiesishematopoietic stem and progenitor cellinflammationquantitative modelregenerationtopology

Identifiers

PMID42314682
PMCPMC13533403

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.