Evidence map›Paper›PMID 42315671›Full record

ReviewPlant cell reports2026

The dynamic landscape of plant DNA demethylation: mechanisms, functions, and environmental responses.

Yumei La, Jingjing Zhuang, Fanqi Ma, Mohammad Saidur Rhaman, Yinggao Liu, Fuyuan Zhu, Yanjie Xie

Abstract readReview
PubMed Publisher
In one paragraph

Review in Plant cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yumei LaNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.
Jingjing ZhuangNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.
Fanqi MaNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.
Mohammad Saidur RhamanDepartment of Seed Science and Technology, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.
Yinggao LiuNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.
Fuyuan ZhuNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.
Yanjie XieNational Key Laboratory for the Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration On Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China. yjxie@njfu.edu.cn.

Funding

National Science Foundation of China 32470299
6 · The paper itself

Abstract

DNA methylation is a fundamental epigenetic modification that regulates gene expression, maintains genome stability, and supports developmental programs in plants. Rather than being static, the plant methylome is highly dynamic and continuously shaped by the opposing activities of DNA methyltransferases and DNA demethylases. Active DNA demethylation, initiated by the DEMETER/REPRESSOR OF SILENCING 1 (DME/ROS1) family of 5-methylcytosine (5mC) DNA glycosylases, is a major mechanism for removing repressive methylation marks and facilitating transcriptional plasticity. This review summarizes current knowledge of the molecular machinery and regulatory networks underlying active DNA demethylation. It highlights multi-layered regulation of demethylases activity, including chromatin-based targeting, assembly of regulatory protein complexes, and transcriptional and post-translational control. We further discuss the roles of DNA demethylation in key developmental processes, including genomic imprinting, fruit ripening, and organogenesis. A major focus is its proposed role as an integrator of environmental signals, mediating plant responses to diverse biotic and abiotic stresses such as drought, salinity, temperature extremes, and pathogen infection. This review also examines crosstalk between DNA demethylation, phytohormone signaling, and metabolic pathways, as well as its roles in stress memory, epigenetic memory, and transgenerational epigenetic inheritance. Finally, we outline key unresolved questions, particularly those related to the mechanistic basis of locus-specific targeting and the stability of stress-induced epigenetic states, including epigenetic memory and transgenerational epigenetic inheritance, and discuss how precision epigenome engineering may provide opportunities to translate these mechanistic insights into targeted regulation of developmental and stress-responsive pathways, thereby advancing crop improvement and sustainable agriculture.

Indexed as

DNA DemethylationDNA MethylationPlantsEpigenesis, GeneticGene Expression Regulation, PlantStress, PhysiologicalActive DNA demethylationEpigenetic regulationEpigenome engineeringFruit ripeningROS1/DME familyStress adaptation

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.