Evidence map›Paper›PMID 42323299›Full record

ArticleNature communications2026

Single-molecule imaging reveals RNA polymerase II dynamics and TAF1-dependent promoter-proximal pause release.

Nayem Haque, Ronald Cutler, Simone Sidoli, Robert A Coleman

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nayem HaqueDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID http://orcid.org/0000-0003-1912-4401
Ronald CutlerDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID http://orcid.org/0000-0001-7744-090X
Simone SidoliDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID http://orcid.org/0000-0001-9073-6641
Robert A ColemanDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY, USA. robert.coleman2@einsteinmed.edu.ORCID http://orcid.org/0000-0002-7367-9603

Funding

Training in Aging ResearchT32AG023475 · NIA · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI NIR J BARZILAI, DEREK Major HUFFMAN · 2004 to 2026
$8.6M
SUPPORT FOR THE ROSE F KENNEDY IDDRC P50P50HD105352 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SOPHIE MOLHOLM, Steven Upshaw Walkley · 2021 to 2026
$7.0M
Dissecting the Dynamic Interplay Between, p53, Chromatin and Transcriptional Bursting in Single CellsR01GM126045 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI COLEMAN, ROBERT · 2018 to 2025
$2.9M
Orbitrap Exploris 480 Basic SystemS10OD030286 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SIDOLI, SIMONE · 2021 to 2021
$600k
National Science Foundation (NSF) FAIN-2437848NIA NIH HHS T32 AG023475NICHD NIH HHS P50 HD105352NIGMS NIH HHS R01 GM126045NIH HHS S10 OD030286U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM126045U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) T32 AG023475U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) S10OD030286
6 · The paper itself

Abstract

Early transcriptional regulation is a major kinetic bottleneck in gene expression, yet the dynamics of RNA polymerase II in living cells remain poorly understood. Here, we use single-molecule imaging to quantify RNA polymerase II chromatin engagement in live human cells. We find that RNA polymerase II infrequently enters a long-lived binding state associated with productive elongation, with ~94% of chromatin-associated events dissociating within tens of seconds. Single-cell analysis reveals substantial heterogeneity in the fraction of RNA polymerase II reaching productive elongation. Spatial heatmap analysis identifies RNA polymerase II clusters enriched for repeated long-lived binding events whose abundance is selectively perturbed by transcriptional inhibitors. Acute degradation of the TFIID subunit TAF1 reduces RNA polymerase II clustering and increases the global pausing index, supporting a model in which TAF1 promotes pause release and entry into productive elongation. Together, these findings provide a single-molecule framework for quantifying transcription kinetics in individual living cells.

Indexed as

Histone AcetyltransferasesPromoter Regions, GeneticRNA Polymerase IISingle Molecule ImagingTATA-Binding Protein Associated FactorsTranscription Factor TFIIDChromatinHeLa CellsHumansKineticsSingle-Cell AnalysisTranscription, GeneticChromatinHistone AcetyltransferasesRNA Polymerase IITATA-binding protein associated factor 250 kDaTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID42323299
PMCPMC13439175

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.