ArticleFEBS open bio2026
MagmaFlow: A desktop platform for artificial intelligence-driven expression analysis.
Article in FEBS open bio, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
Abstract
While simplistic volcano plot visualizations of multi-omics changes can highlight the most critical genomic, transcriptomic, or proteomic features, integrative frameworks combining literature evidence, pathway associations, and functional annotation remain limited. We present MagmaFlow, a cross-platform application offering three key capabilities: literature-based gene scoring, interactive pathway-to-volcano mapping, and synchronized cross-view updates. The literature module retrieves gene associations from PubMed via PubTator3, provides direct PubMed identifier (PMID) links, and ranks genes by context-specific relevance. The pathway module visualizes enrichment as multi-layer circle plots displaying cross-pathway membership, automatically synchronized with volcano selections. Interactive features include smart label positioning, drag-and-drop annotation, double-click gene targeting, and customizable styles for publication-quality figures. Thus, MagmaFlow transforms volcano plot analysis from static display into dynamic biological interpretation. To our knowledge, this is the first tool integrating artificial intelligence-powered literature contextualization and enrichment analysis to convert differential expression data into actionable insights.
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What Socratic holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.