Evidence map›Paper›PMID 42383741›Full record

ArticlemSystems2026

Global distribution of isoprenoid quinones across Bacteria.

Sophie-Carole Chobert, Suraj Kanwar, Olivier Lerouxel, Nelle Varoquaux, Julie Michaud, Ludovic Pelosi, Fabien Pierrel, Sophie S Abby

Abstract read
In one paragraph

Article in mSystems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sophie-Carole ChobertUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.
Suraj KanwarUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.
Olivier LerouxelUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.
Nelle VaroquauxUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.
Julie MichaudUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.
Ludovic PelosiUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.ORCID 0000-0002-4198-5681
Fabien PierrelUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.ORCID 0000-0003-2083-3002
Sophie S AbbyUniv. Grenoble Alpes, CNRS, UMR 5525, VetAgro Sup, Grenoble INP, TIMC, Grenoble, France.ORCID 0000-0002-5231-3346

Funding

Agence Nationale de la Recherche ANR-21-CE02-0018
6 · The paper itself

Abstract

Isoprenoid quinones are redox-active lipids essential for numerous cellular processes, including ATP synthesis via electron transport chains. They are found across all domains of life. Their diversity among microbial taxa has established them as chemotaxonomic markers, while recent studies have linked quinone repertoire variations to metabolic adaptations, and have identified novel quinone types. Despite this renewed interest, a comprehensive overview of quinone distribution across Bacteria is missing. Here, we systematically annotated quinone biosynthetic pathways for major quinones (ubiquinone, rhodoquinone, plastoquinone, and menaquinone) across 26,264 high-quality bacterial genomes. We also text-mined quinone data from over 6,000 species in published abstracts to validate our genomic annotations while compiling valuable information on quinone chains. Mapping these data onto a phylogenetic framework provides the most extensive synthesis of quinone distribution in Bacteria to date. Our analysis reveals an unexpectedly dynamic evolutionary history for the two menaquinone-producing pathways. Furthermore, the discovery and experimental validation of a deeply branching ubiquinone pathway in the phylum

Indexed as

BacteriaQuinonesTerpenesBiosynthetic PathwaysGenome, BacterialPhylogenyUbiquinoneQuinonesTerpenesUbiquinonecomparative genomicscomputational biologyelectron transfer chainsmetabolismtext mining

Identifiers

PMID42383741
PMCPMC13386864

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.