Evidence mapPaperPMID 42396283Full record

ArticlemedRxiv : the preprint server for health sciences2026

TCIA Radiology Image Processing for AI and Radiomics.

Joseph Rich, Raphi Kang, David Jin, Saanvi Subramanian, Vinay Duddalwar, Lior Pachter

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joseph RichBiology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.ORCID 0000-0003-1400-8479
Raphi KangBiology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
David JinBiology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
Saanvi SubramanianBiology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.
Vinay DuddalwarKeck School of Medicine of the University of Southern California, Los Angeles, CA, 90033, USA.
Lior PachterBiology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.ORCID 0000-0002-9164-6231

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed a standardized, reproducible preprocessing framework for computed tomography (CT) imaging data from multi-institutional repositories such as The Cancer Imaging Archive (TCIA), enabling consistent radiomics and artificial intelligence (AI) analyses. Imaging data from TCGA-KIRC patients available on TCIA were used as a representative heterogeneous dataset characterized by variation in acquisition protocols, inconsistent metadata, and differing image quality. The pipeline includes series filtering, DICOM-to-NIfTI conversion, orientation harmonization to a canonical coordinate system, voxel spacing normalization, intensity clipping and normalization, segmentation integration, and metadata validation, and is implemented in a reproducible, notebook-based framework compatible with common radiomics and deep learning workflows. This pipeline standardizes imaging data into analysis-ready volumes with consistent geometry, intensity distributions, and spatial alignment, reducing non-biological variability that can adversely affect radiomic feature stability and model performance. The modular design enables task-specific adaptation of individual preprocessing steps while maintaining overall consistency. Although demonstrated on TCIA, this framework is generalizable to other heterogeneous imaging datasets and provides a foundation for robust, large-scale computational imaging studies.

Indexed as

Artificial IntelligenceComputed TomographyData ProcessingThe Cancer Imaging Archive

Identifiers

PMID42396283
PMCPMC13321174

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.