Evidence map›Paper›PMID 42422861›Full record

ArticleBrain disorders (Amsterdam, Netherlands)2022

The Deepsqueak analysis system is as accurate, yet more efficient, than the Avisoft system across C57BL/6, FVB.129, and FVB mice.

Matthew S Binder, Zachary J Pranske, Joaquin N Lugo

Abstract read
In one paragraph

Article in Brain disorders (Amsterdam, Netherlands), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Matthew S BinderDepartment of Psychology and Neuroscience, Baylor University, Waco, TX 76798, USA.
Zachary J PranskeDepartment of Psychology and Neuroscience, Baylor University, Waco, TX 76798, USA.
Joaquin N LugoDepartment of Psychology and Neuroscience, Baylor University, Waco, TX 76798, USA.

Funding

Signaling Mechanisms Underlying Epilepsy and Autism CormorbidityR15NS088776 · NINDS · BAYLOR UNIVERSITY · PI JOAQUIN N LUGO · 2015 to 2026
$1.8M
NINDS NIH HHS R15 NS088776
6 · The paper itself

Abstract

Mouse communicative behaviors are referred to as ultrasonic vocalizations (USVs). USVs are relevant to human health and are commonly recorded with the Avisoft-SASLab Pro recording system and the DeepSqueak system however, no study has compared DeepSqueak's accuracy to Avisoft-SASLab Pro's so it is unclear which is the optimal program. We used male and female C57BL/6, FVB.129, and FVB mice and assessed the total USVs detected, USV duration, fundamental frequency, and within system consistency for each system. We found that for all strains assessed, there were extremely high correlations for the quantity of vocalizations that were detected between Avisoft-SASLab Pro and DeepSqueak. Furthermore, no significant differences in USV detection between systems were found for any of the strains. A partial correlation was run to control for the strain, sex, and age covariates and found that no covariate substantially influenced the relationship between the USVs detected in Avisoft-SASLab Pro and those detected in DeepSqueak. We also investigated the duration and fundamental frequency of vocalizations between systems and found medium to large correlations across all strains and several significant differences. We next found that DeepSqueak has higher internal consistency than Avisoft-SASLab Pro when assessing USV duration and fundamental frequency. Lastly, we assessed the average time taken to analyze a file and found DeepSqueak to be the faster system. Altogether, these findings demonstrate that while both DeepSqueak and Avisoft-SASLab Pro are accurate and reliable, DeepSqueak is a more efficient USV analysis program.

Indexed as

Autism spectrum disorderCommunicationEpilepsyMethodsReproducibility

Identifiers

PMID42422861
PMCPMC13344183

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.