Evidence map›Paper›PMID 42446195›Full record

ArticleMicrobiology spectrum2026

Comparative genomic analysis of

Renee E Oles, Marvic Carrillo Terrrazas, Luke R Loomis, Simone Zuffa, Maxwell J Neal, Chia-Yun Hsu, Adriana Vasquez Ayala, Caitlin Tribelhorn, Pedro Belda-Ferre, Jianshu Zhao and 11 more

Abstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Renee E Oles *Department of Pathology, University of California, San Diego, California, USA.ORCID 0000-0001-5945-0215
Marvic Carrillo Terrrazas *Department of Pathology, University of California, San Diego, California, USA.ORCID 0000-0002-8830-5161
Luke R LoomisDepartment of Pathology, University of California, San Diego, California, USA.
Simone ZuffaSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA.
Maxwell J NealDepartment of Bioengineering, University of California, San Diego, California, USA.
Chia-Yun HsuDepartment of Pathology, University of California, San Diego, California, USA.
Adriana Vasquez AyalaDepartment of Pathology, University of California, San Diego, California, USA.
Caitlin TribelhornDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.
Pedro Belda-FerreDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.
Jianshu ZhaoDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.
MacKenzie BryantDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.
Jasmine ZemlinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA.
Jocelyn YoungDivision of Gastroenterology, Hepatology and Nutrition, University of California, San Diego and Rady Children's Hospital, San Diego, California, USA.
Parambir S DulaiDivision of Gastroenterology, University of California, San Diego, California, USA.
William J SandbornDivision of Gastroenterology, University of California, San Diego, California, USA.
Mamata SivagnanamDivision of Gastroenterology, Hepatology and Nutrition, University of California, San Diego and Rady Children's Hospital, San Diego, California, USA.
David PrideDepartment of Pathology, University of California, San Diego, California, USA.
Karsten ZenglerDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.ORCID 0000-0002-8062-3296
Pieter C DorresteinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA.
Rob KnightDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, California, USA.ORCID 0000-0002-0975-9019
Hiutung ChuDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0001-7489-0446

Funding

Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
Rheumatic Diseases Research Training GrantT32AR064194 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GARY S FIRESTEIN, Monica Guma · 2013 to 2026
$3.8M
Bacterial adaptions in host-microbe interactions.R01AI167860 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Hiutung Chu · 2022 to 2026
$2.8M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Howard Hughes Medical Institute GT15123National Institute of Allergy and Infectious Diseases R01 AI167860NIAID NIH HHS R01 AI167860NIAMS NIH HHS T32 AR064194NIDDK NIH HHS T32 DK007202NIH HHS S10 OD026929
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Bacteroides fragilisBacteroides InfectionsGastrointestinal MicrobiomeGenome, BacterialIntestinesGenome-Wide Association StudyGenomicsHumansMetabolomicsPhylogenyBacteroides fragilismGWASmicrobial genomicspangenomephylogenetics

Identifiers

PMID42446195
PMCPMC13435655

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.