Evidence map›Paper›PMID 42454302›Full record

ArticleFrontiers in public health2026

Impact of COVID-19 on sputum isolates and hospital outcomes among patients with pneumonia in Sheffield, United Kingdom: a retrospective cohort study.

Patrick Copley, Emmanuel Firima, Natasha James, Matthew Saunders, David Partridge, Joby Cole

Abstract read
In one paragraph

Article in Frontiers in public health, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Patrick Copley *Department of Infection and Tropical Medicine, Royal Hallamshire Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, United Kingdom.
Emmanuel Firima *Department of Infection and Tropical Medicine, Royal Hallamshire Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, United Kingdom.
Natasha JamesDepartment of Infection and Tropical Medicine, Royal Hallamshire Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, United Kingdom.
Matthew SaundersDepartment of Infection and Tropical Medicine, Royal Hallamshire Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, United Kingdom.
David PartridgeThe Florey Institute, University of Sheffield, Sheffield, United Kingdom.
Joby ColeDepartment of Infection and Tropical Medicine, Royal Hallamshire Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and aim: The COVID-19 pandemic caused by SARS-CoV-2 severely affected healthcare globally. Strong links have been suggested between the pandemic and changes in the epidemiology of organisms responsible for non-COVID-19 pneumonia. In this study, we examined temporal changes in organisms recovered from sputum culture, integrating laboratory data from all submitted sputum specimens with clinical data from a subset of patients diagnosed with community-acquired pneumonia (CAP). Method: A retrospective study was conducted from August 2017 to May 2024 using data derived from samples from healthcare centres in Sheffield including hospitals, general practices, hospices and other palliative care settings. August 2017 to March 2020, April 2020 to September 2022, and October 2022 to May 2024 were defined as before, during, and after COVID-19 periods, respectively. Absolute percentage-point change in the distribution of organisms was performed at genera level. Results: A total of 50,827 culture positive isolate episodes from sputum samples were analysed during the study period, of which 25,085 (45.4%; 783.9 isolate episodes per month), 11,644 (22.9%; 388.1 isolate episodes per month) and 14,098 (27.7%; 704.9 isolate episodes per month) were obtained before, during and after COVID-19, respectively. Overall, the commonest cultured genus were Conclusion: We found substantial differences in the number of isolate episodes identified. This could present important considerations for treatment of patients presenting with CAP during future pandemics.

Indexed as

COVID-19SputumAgedCommunity-Acquired PneumoniaFemaleHumansMaleRetrospective StudiesSARS-CoV-2United Kingdomcommunity acquired pneumoniaCOVIDepidemiologypneumonia - clinical features and managementStreptococcus pneumonia

Identifiers

PMID42454302
PMCPMC13364976

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.