Evidence map›Paper›PMID 42474199›Full record

ArticleMicrobiology spectrum2026

Clinical impact of metagenomic next-generation sequencing for pathogen identification and guided therapy in pediatric intensive care unit patients with severe pulmonary infections.

Yuping Xu, Ruijuan Ren, Weiqing Liu, Ling Liu, Xinyan Cui, Jia Guo, Shujun Li

Abstract read
In one paragraph

Article in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuping XuDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.
Ruijuan RenDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.
Weiqing LiuDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.
Ling LiuDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.
Xinyan CuiDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.
Jia GuoDepartment of Pediatric Hematology and Oncology, Cardiovascular Diseases, The First Affiliated Hospital of Henan Medical University, Henan, China.
Shujun LiDepartment of PICU, The First Affiliated Hospital of Henan Medical University, Henan, China.ORCID 0009-0000-9153-5323

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To explore the diagnostic efficiency, clinical concordance, and precision treatment value of metagenomic next-generation sequencing (mNGS) for severe pulmonary infections in children in the pediatric intensive care unit (PICU), and to provide evidence for improving microbiological diagnosis and optimizing anti-infective strategies. A retrospective cohort study included 89 children with severe pneumonia in the PICU in 2024. All underwent routine microbiological testing and mNGS of bronchoalveolar lavage fluid (BALF). Detection rates, pathogen composition, co-infection identification, diagnostic concordance, and treatment impact were analyzed. Metagenomic next-generation sequencing demonstrated high diagnostic sensitivity in the PICU setting, achieving a positive detection rate of 90.0% (80/89) and identifying a diverse spectrum of 103 pathogens, including 50.5% viruses, 43.7% bacteria, 38.8% co-infections (vs 11.6%), and 86.3% diagnostic concordance (vs 55.8%, IMPORTANCE: It supports metagenomic next-generation sequencing (mNGS) as a supplementary tool for pediatric intensive care unit (PICU) refractory infections, guides anti-infective adjustments, and informs tiered diagnostic pathways for resource-limited settings to optimize cost-effectiveness.

Indexed as

BacteriaHigh-Throughput Nucleotide SequencingMetagenomicsPneumoniaBronchoalveolar Lavage FluidChildChild, PreschoolCoinfectionFemaleHumansInfantIntensive Care Units, PediatricMaleRetrospective StudiesVirusesgenetic testinghost-pathogen interactionsinfectionlungpediatric intensive care unit

Identifiers

PMID42474199
PMCPMC13532271

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.