Evidence map›Paper›PMID 42474609›Full record

ArticleJournal of molecular neuroscience : MN2026

Integrated Bioinformatics and Network Analysis Identifies Key Molecular Targets and Hub Genes in Zika Virus-induced Neuroinflammation.

Akmal Zubair, Muhammad Ali, Adel Qlayel Alkhedaide

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Article in Journal of molecular neuroscience : MN, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

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No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Akmal ZubairDepartment of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan. akmalkhattak1994@gmail.com.
Muhammad AliDepartment of Biotechnology, Quaid-i-Azam University, Islamabad, Pakistan.
Adel Qlayel AlkhedaideDepartment of Clinical Laboratory Sciences, Turabah University College, Taif University, P.O. Box 11099, Taif, 21944, Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Zika virus (ZIKV) infection has shown significant neurodevelopmental and neurological abnormalities. However, the molecular mechanisms of ZIKV-induced neuroinflammation are poorly understood. In the current study, an integrative approach of bioinformatics analysis was used to identify the molecular targets involved in the ZIKV infection. Microarray data sets consisting of 65 samples (35 ZIKV-positive and 30 controls) from the Gene Expression Omnibus (GEO) database were used for the study. The differentially expressed genes (DEGs) analysis revealed 1,268 differentially expressed genes, of which 505 genes were up-regulated, while 763 genes were found to be down-regulated. The analysis using the weighted gene co-expression network analysis (WGCNA) revealed two modules that showed significant correlation with the ZIKV-positive samples. A total of 535 overlapping genes were used for further analysis. The protein-protein interaction (PPI) network analysis revealed ten hub genes: ITGAM, CD86, PTPRC, FCGR3A, ITGB2, TNF, ITGAX, CSF1R, CCR5, and CD4. This study suggests that the immune response plays an important role in the ZIKV infection. The study also revealed a significant enrichment of genes associated with neurogenesis, synaptic organization, axon guidance, immune response and amyloid beta binding by performing gene ontology (GO) analysis. This data potentially indicates that ZIKV infection can modulate these key hub genes to cause neuroinflammation. In addition, the study also revealed that the ZIKV infection can regulate various transcription factors and microRNAs that regulate these hub genes, indicating the complex regulatory mechanism of the ZIKV infection. Furthermore, the study revealed that the receiver operating characteristic (ROC) curve analysis showed that these hub genes, especially CCR5, are of preliminary diagnostic potential value. The study provided new insights into the molecular mechanisms of ZIKV-induced neuroinflammation and revealed the potential biomarkers and therapeutic targets of ZIKV-induced neurological disorders.

Indexed as

Gene Regulatory NetworksNeuroinflammatory DiseasesProtein Interaction MapsZika Virus InfectionComputational BiologyHumansZika VirusBioinformaticsBiomarkersCCR5Hub genesMicroarray analysisNeuroinflammationProtein-protein interaction (PPI)Synaptic organizationWGCNAZika virus

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.