Evidence map›Paper›PMID 42479691›Full record

ReviewThe ISME journal2026

Enrichment is not necessarily recruitment in root microbiome assembly.

Jingyin Xie, Tengxiang Lian

Abstract readReview
In one paragraph

Review in The ISME journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jingyin XieGuangdong Basic Research Center of Excellence for Precise Breeding of Future Crops, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory for the Development Biology and Environmental Adaptation of Agricultural Organisms, South China Institute for Soybean Innovation Research, College of Agriculture, South China Agricultural University, No. 483 Wushan Road, Tianhe District, Guangzhou, Guangdong Province 510642, China.
Tengxiang LianGuangdong Basic Research Center of Excellence for Precise Breeding of Future Crops, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory for the Development Biology and Environmental Adaptation of Agricultural Organisms, South China Institute for Soybean Innovation Research, College of Agriculture, South China Agricultural University, No. 483 Wushan Road, Tianhe District, Guangzhou, Guangdong Province 510642, China.ORCID 0000-0003-1131-2491

Funding

Funding of National Natural Science Foundation of China 32470090Modern Agriculture Industry Technology System Innovation Teams (Oil Crop Industry Technology System 2024CXTD06
6 · The paper itself

Abstract

Rhizosphere enrichment is often interpreted as evidence that plants recruit beneficial microorganisms from soil, but enrichment and recruitment describe different levels of inference. Enrichment is a compositional pattern, whereas root association is a broader outcome produced by distinct processes through which microorganisms reach, attach to, colonize, and persist on roots. Within this outcome, recruitment in a narrower, directional sense denotes cases in which host-derived cues promote microbial attraction to, and/or specific attachment on, roots. Recruitment in this sense is independent of benefit because recruited microbes may be beneficial, neutral, or harmful. This distinction is often blurred when differential abundance alone is used to infer host-driven recruitment. Recruitment claims should instead be evaluated through microbial traits and host physiological, immune, and metabolic states that jointly determine root association. Motile bacteria with flagella, chemotaxis systems, and extracellular polysaccharides can respond directionally to root-derived cues and stabilize attachment on root surfaces. Many root-associated fungi lack comparable active motility, and their enrichment more often reflects contact opportunity, surface compatibility, and host immune permissiveness. Recent work further shows that enrichment can be uncoupled from plant benefit, because host physiological states may create permissive niches, whereas strain-level competition determines functional outcomes. We therefore propose a framework that separates microbe-driven attraction and attachment from host-mediated accommodation and persistence. Rhizosphere enrichment is thus an observable outcome, not a default signature of recruitment or benefit. Precise recruitment language requires trait-based, spatial, temporal, and functional evidence linking microbial presence to the mechanisms that generate and maintain root association.

Indexed as

MicrobiotaPlant RootsSoil MicrobiologyBacteriaFungiRhizospherehost-mediated selectionmicrobial recruitmentplant–microbe interactionsrhizosphere enrichmentroot microbiome

Identifiers

PMID42479691
PMCPMC13499458

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.