Evidence map›Paper›PMID 42483501›Full record

ArticleFrontiers in plant science2026

High-quality draft genome assembly and functional annotation of

Roneil Christian S Alonday, Julianne Vilela, Damsel C Bangcal-Villariño, John Ivan I Pasquil, Kaito O Furusho, Adrian Sam Arcillo, Maiah Cheng, Maria Genaleen Q Diaz, Antonio G Lalusin, Antonio C Laurena

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in plant science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Roneil Christian S AlondayPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
Julianne VilelaPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
Damsel C Bangcal-VillariñoPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
John Ivan I PasquilPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
Kaito O FurushoPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
Adrian Sam ArcilloInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, College, Laguna, Philippines.
Maiah ChengInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, College, Laguna, Philippines.
Maria Genaleen Q DiazPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.
Antonio G LalusinInstitute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, College, Laguna, Philippines.
Antonio C LaurenaPhilippine Genome Center Program for Agriculture, Livestock, Fisheries, and Forestry, Office of the Vice Chancellor for Research and Extension, University of the Philippines Los Baños, College, Laguna, Philippines.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Abaca ( Methods: The genome was sequenced using PacBio HiFi technology and assembled de novo, followed by repeat annotation, gene prediction, functional characterization, and comparative genomic analyses with other Results: The assembled genome spans 612.5 Mb across 388 contigs, with a contig N50 of 9.02 Mb and a BUSCO completeness score of 98.9%, indicating high assembly quality and completeness. Functional annotation identified 37,403 high-confidence protein-coding genes. Repetitive elements account for 59.18% of the genome, representing one of the highest repeat contents reported among Discussion: This high-quality genome assembly expands the genomic resources available for abaca and provides insights into genome organization, repeat landscape, and fiber-related gene content. The genome will support comparative genomics, marker development, and breeding strategies aimed at improving fiber quality, disease resistance, and climate resilience in abaca.

Indexed as

fiber qualitygenome annotationgenome assemblyInosaMusa textilisPacBio HiFi

Identifiers

PMID42483501
PMCPMC13386271

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.