Evidence map›Paper›PMID 42488926›Full record

ArticleClinical, cosmetic and investigational dermatology2026

Integrative Transcriptomic and Genetic Analysis Prioritizes

Jizhao Yao, Honghui Chen, Xiulian Zhou, Ting Hu, Hengshan Guo, Lili Ma, Minhong Liu, Fangyan Liu, Ruiyang Zhang, Weiquan Li

Abstract read
In one paragraph

Article in Clinical, cosmetic and investigational dermatology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jizhao YaoDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Honghui ChenDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Xiulian ZhouDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Ting HuDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Hengshan GuoDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Lili MaDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Minhong LiuDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Fangyan LiuDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Ruiyang ZhangDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.
Weiquan LiDepartment of Dermatology, Yuebei People's Hospital, Shaoguan, Guangdong, 512026, People's Republic of China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Programmed cell death (PCD) has been implicated in various autoimmune disorders, but its role in vitiligo remains poorly understood. This study aimed to identify PCD-related genes and elucidate their potential contribution to vitiligo pathogenesis through integrative bioinformatics analysis. Methods: Three GEO datasets (GSE65127, GSE53146, GSE75819) were merged to obtain a combined cohort of 40 controls and 30 vitiligo samples. Differentially expressed genes (DEGs) were identified using limma. GSVA was applied to assess 11 PCD pathways. Summary-data-based Mendelian randomization (SMR) and HEIDI testing integrated eQTL data with vitiligo to pinpoint causal genes. Bayesian colocalization and immune infiltration analyses were further performed. Results: A total of 922 DEGs were identified, with pyroptosis and cuproptosis signatures upregulated in vitiligo whereas overall autophagy- and lysosome-dependent cell death-related gene expression was decreased. In contrast, pathway-level GSVA using a broader autophagy-related gene set indicated upregulated autophagy signaling, highlighting the context dependence of autophagy-related signatures. Overlapping DEGs with PCD gene sets yielded 75 differentially expressed PCD-related genes. SMR analysis prioritized 602 genes associated with vitiligo risk, and intersection with PCD genes highlighted Conclusion: This study identifies

Indexed as

genetic susceptibilityimmune cell infiltrationprogrammed cell deathSMR analysistranscriptomicsvitiligo

Identifiers

PMID42488926
PMCPMC13390678

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.