Evidence map›Paper›PMID 42557239›Full record

ArticleNature communications2026

Genome shuffling enables quantitative trait locus mapping in Bacillus subtilis.

Delyana P Vasileva, Hari B Chhetri, Leah H Hochanadel, Jared C Streich, John H Lagergren, Matthew J Lane, Apurv Mhatre, Oumar Sacko, Marco N Allemann, Edanur Oksuz and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Delyana P VasilevaBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-7919-7883
Hari B ChhetriBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0001-6820-8789
Leah H HochanadelBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0009-0006-9282-0832
Jared C StreichBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0003-4861-1188
John H LagergrenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-8092-7433
Matthew J LaneBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-7750-6822
Apurv MhatreBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Oumar SackoBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Marco N AllemannBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Edanur OksuzBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0009-0002-6385-7952
Dana L CarperBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-4758-8054
Benjamin RubinoBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-9617-2143
Sadie ChitwoodBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0009-0004-8781-6615
Zachary D SchmitzBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0001-5082-8680
Dawn M KlingemanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-4307-2560
Paul E AbrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0003-2685-9123
Richard J GiannoneBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0001-8551-0138
Daniel A JacobsonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA. jacobsonda@ornl.gov.ORCID 0000-0002-9822-8251
Joshua K MichenerBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA. michenerjk@ornl.gov.ORCID 0000-0003-2302-8180

Funding

DOE | SC | Biological and Environmental Research (BER) DE-AC02-05CH11231DOE | SC | Biological and Environmental Research (BER) ERKP971DOE | SC | Biological and Environmental Research (BER) ERKPA17
6 · The paper itself

Abstract

Genetic mapping is a powerful tool for eukaryotic genetics that has only been applied to bacteria in limited circumstances. Quantitative trait locus (QTL) mapping generally relies on sexual recombination to break linkages between genes, yet bacteria rarely undergo sufficient homologous recombination to generate suitable mapping populations. In this work, we used iterative biparental genome shuffling by protoplast fusion in Bacillus subtilis to generate a population of bacteria with substantial random recombination throughout their genomes. Individual shuffled progeny were arrayed in well plates, resequenced, and characterized for a range of complex phenotypes, including spore germination and swarming motility. Genetic mapping of the resulting phenotypes identified high-confidence QTLs of moderate size (~15 kb), and these associations were validated through targeted genetic swaps. This B. subtilis QTL population can easily be used to map additional phenotypes and the general approach for QTL mapping is applicable to a wide range of Gram-positive and Gram-negative bacteria using diverse methods for genome-wide recombination.

Indexed as

Bacillus subtilisChromosome MappingDNA ShufflingGenome, BacterialQuantitative Trait LociPhenotypeRecombination, Genetic

Identifiers

PMID42557239
PMCPMC13443641

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.