Evidence map›Paper›PMID 42594164›Full record

ArticlePlant physiology2026

Monitoring the fate of paternal mitochondria and their elimination in rice zygotes.

Hanifah Aini, Riho Tomishima, Kasidit Rattanawong, Mari Tanaka, Hiroyuki Tsuji, Yumi Goto, Mayuko Sato, Kiminori Toyooka, Takashi Okamoto

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hanifah AiniDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.ORCID 0000-0002-4096-0343
Riho TomishimaDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.
Kasidit RattanawongDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.ORCID 0000-0002-4291-4148
Mari TanakaKihara Institute for Biological Research, Yokohama City University, Kanagawa 244-0813, Japan.
Hiroyuki TsujiKihara Institute for Biological Research, Yokohama City University, Kanagawa 244-0813, Japan.ORCID 0000-0002-6444-559X
Yumi GotoCenter for Sustainable Resource Science, RIKEN, Kanagawa 230-0045, Japan.ORCID 0009-0003-1454-9854
Mayuko SatoCenter for Sustainable Resource Science, RIKEN, Kanagawa 230-0045, Japan.ORCID 0000-0002-9876-5612
Kiminori ToyookaCenter for Sustainable Resource Science, RIKEN, Kanagawa 230-0045, Japan.ORCID 0000-0002-6414-5191
Takashi OkamotoDepartment of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.ORCID 0000-0001-6531-210X

Funding

Advanced Imaging Support JP22H04926Grant-in-Aid for Scientific Research (A) 25H00933)Grant-in-Aid for Scientific Research (B) 22H02315Grant-in-Aid for Scientific Research (B) 25K01990Grant-in-Aid for Scientific Research (S) 22H04978GteX Program Japan JPMJGX23B0JSPS KAKENHIJST-Mirai Program JPMJM120C8JST-Mirai Program JPMJMI23C1
6 · The paper itself

Abstract

Mitochondria are preferentially transmitted from the maternal plant in most angiosperms, including rice, and paternal mitochondria are generally eliminated during microgametogenesis and/or in zygotes. The mechanism by which paternal mitochondria are eliminated progresses during plant reproductive processes. In the present study, we examined the distribution of paternal mitochondria in rice sperm cells and zygotes produced through the in vitro fertilization (IVF) of isolated rice gametes. Male gametes of rice possess mitochondria with nucleoids, suggesting the potential transfer of paternal mitochondria and their DNA into zygotes on fertilization and subsequent selective elimination of paternal mitochondria in the zygote. To intensively monitor the fate of rice paternal mitochondria in zygotes immediately after gamete fusion, time-lapse observations were conducted in paternal mitochondria labeled with GFP from rice zygotes produced using an IVF system. The results showed that the paternal mitochondria are progressively degraded during the early developmental stage at 1 to 3 h after fusion (HAF), leaving a small number of paternal mitochondria at 6 HAF. The remaining paternal mitochondria were considered to be degraded in later developmental-stage zygotes because paternal mitochondrial DNA-derived single-nucleotide polymorphisms were not detected in the sequencing reads of genomic DNA prepared from inter-subspecific hybrid rice. In addition, treatment with autophagy inhibitors stabilized the paternal mitochondria in zygotes. This suggests that the autophagy-dependent massive and selective elimination machinery for male mitochondria functions in rice zygotes immediately after gamete fusion and supports the strict maternal inheritance of mitochondria in rice.

Indexed as

MitochondriaOryzaZygoteDNA, MitochondrialFertilizationGerm Cells, PlantDNA, Mitochondrial

Identifiers

PMID42594164
PMCPMC13535234

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.