Evidence map›Paper›PMID 42619910›Full record

ArticlebioRxiv : the preprint server for biology2026

Systematic modeling of phenotypic drug response profiles in patient-derived organoids.

Seungil Kim, Einar Bjarki Gunnarsson, Michael E Doche, Yuyuan Zhou, Yu-Kai Huang, Scott Valena, Pratiksha Kshetri, Elizabeth Elton, Nolan Ung, Abigail Coleman and 8 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Seungil KimEllison Medical Institute, Los Angeles, CA. USA.ORCID 0000-0003-1768-8473
Einar Bjarki GunnarssonApplied Mathematics Division, Science Institute, University of Iceland, Reykjavík, Iceland.
Michael E DocheEllison Medical Institute, Los Angeles, CA. USA.
Yuyuan ZhouEllison Medical Institute, Los Angeles, CA. USA.
Yu-Kai HuangEllison Medical Institute, Los Angeles, CA. USA.
Scott ValenaEllison Medical Institute, Los Angeles, CA. USA.
Pratiksha KshetriEllison Medical Institute, Los Angeles, CA. USA.
Elizabeth EltonEllison Medical Institute, Los Angeles, CA. USA.
Nolan UngEllison Medical Institute, Los Angeles, CA. USA.
Abigail ColemanEllison Medical Institute, Los Angeles, CA. USA.
Benedikt Vilji MagnússonApplied Mathematics Division, Science Institute, University of Iceland, Reykjavík, Iceland.
Niki TorabEllison Medical Institute, Los Angeles, CA. USA.
Lara S PapasianEllison Medical Institute, Los Angeles, CA. USA.
Brandon ChoiEllison Medical Institute, Los Angeles, CA. USA.
Eileen FungEllison Medical Institute, Los Angeles, CA. USA.
Hanaa Knaneh-MonemEllison Medical Institute, Los Angeles, CA. USA.
Jasmine FooSchool of Mathematics, University of Minnesota, Twin Cities, MN. USA.ORCID 0000-0001-8238-325X
Shannon M MumenthalerEllison Medical Institute, Los Angeles, CA. USA.ORCID 0000-0003-2687-3769

Funding

A microengineered colon cancer-chip designed to investigate tumor-stromal interactions driving cancer progressionR01CA241137 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MUMENTHALER, SHANNON MICHELLE · 2021 to 2025
$2.3M
NCI NIH HHS R01 CA241137
6 · The paper itself

Abstract

Patient-derived tumor organoids provide a physiologically relevant 3D disease model for preclinical drug discovery, surpassing the limitations of conventional 2D cell lines. To better capture the dynamic nature of organoid drug responses, we developed a new systematic evaluation method called SCOPE (Systematic Classification of Organoids for Phenotypic Evaluation), harnessing phenotypic assessments from multi-timepoint 3D imaging data. By integrating artificial intelligence (AI)-based image analysis of organoid viability with tracking and mathematical modeling of organoid growth over time, we captured temporal- and dose-dependent dynamics of phenotypic changes, culminating in two novel metrics: a combined growth and viability (

Identifiers

PMID42619910
PMCPMC13484197

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.