Evidence map›Paper›PMID 42643698›Full record

ArticleHorticulture research2026

Graph-based pangenomics reveals the genetic basis of agronomic traits in tomato fruits.

Xiao Su, Ran Du, Zijing Xing, Qinqin Yang, Yun Liu, Yan Wang, Yingfang Zhu, Jie Ye, Tao Lin

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Horticulture research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiao SuCollege of Horticulture, China Agricultural University, Beijing 100193, China.
Ran DuKey Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.ORCID https://orcid.org/0000-0002-6647-0780
Zijing XingNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.
Qinqin YangCollege of Horticulture, China Agricultural University, Beijing 100193, China.
Yun LiuCollege of Horticulture, China Agricultural University, Beijing 100193, China.
Yan WangCollege of Horticulture, China Agricultural University, Beijing 100193, China.
Yingfang ZhuState Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475001, China.ORCID https://orcid.org/0000-0003-4313-1708
Jie YeNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID https://orcid.org/0000-0001-7728-3588
Tao LinCollege of Horticulture, China Agricultural University, Beijing 100193, China.ORCID https://orcid.org/0000-0003-3647-0488

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato serves as a globally important vegetable crop and a genetic model organism, and the improvement of its agronomic traits represents a central objective in breeding. While graph-based pangenomes comprehensively capture species-wide genetic diversity, those built from large cohorts of individuals frequently present considerable computational challenges. To address this, we constructed a graph-based pangenome that integrated only the spectrum of genetic variants between wild (

Identifiers

PMID42643698
PMCPMC13503963

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.