Evidence map›Paper›PMID 42656776›Full record

ArticleJournal of pathology informatics2026

Slide-free FIBI histology for improved quantitative vascular network analysis in breast cancer: Integrating vessel geometry and topology metrics.

Shael Brown, Nathan Anderson, Jazmin Orozco, Richard Levenson

Abstract read
In one paragraph

Article in Journal of pathology informatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Shael Brown84 Albert St., London NW1 7NR, UK.
Nathan AndersonUC Davis Health, Sacramento, CA 98517, USA.
Jazmin OrozcoUC Davis Health, Sacramento, CA 98517, USA.
Richard LevensonUC Davis Health, Sacramento, CA 98517, USA.

Funding

IMAT-ITCR Collaboration: Combining FIBI and topological data analysis: Synergistic approaches for tumor structural microenvironment explorationR33CA278544 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ICZKOWSKI, KENNETH A · 2023 to 2025
$988k
NCI NIH HHS R33 CA278544
6 · The paper itself

Abstract

Digital pathology increasingly seeks to extract quantitative vascular and microenvironmental features from routine histology images, but thin-section hematoxylin and eosin (H&E) slides can fragment vessels and obscure their spatial organization, constraining downstream computational analysis. Slide-free fluorescence-imitating brightfield imaging (FIBI) produces histology-like images directly from fresh or fixed tissue or from already prepared paraffin blocks within minutes and can better preserve apparent microvascular continuity in breast cancer and other specimens. In this exploratory digital pathology study, we acquired paired FIBI and H&E images from paraffin-embedded breast tissue blocks, manually segmented blood vessels in tumor and tumor-adjacent stroma, and quantified vascular architecture using both standard geometry-based metrics and topology-derived descriptors of inter-vessel arrangement, including a persistent-homology-based "vessel spacing" metric that captures multiscale clustering. Here, geometry refers to properties of individual vessels (size, length, and branching), whereas topology summarizes how vessels are arranged as a network, including how closely or loosely they cluster. FIBI images exhibited an easily appreciable increase in vascular information compared with matched H&E slides, with vessels appearing more continuous and more clearly resolved in both geometry (e.g., larger area, more branched, etc.) and network topology (e.g., decreased inter-vessel separation). Motivated by this qualitative impression of increased informational content, the goal of this study was to quantitatively assess and validate these differences by contrasting complementary geometry and topology-derived metrics of vessels in pairs of H&E and FIBI images. In particular, persistent homology-derived topology metrics provided information that was not linearly explained by standard geometric descriptors. Together, these findings demonstrate a practical digital pathology pipeline that integrates slide-free FIBI acquisition, vessel annotation, geometry- and topology-based feature extraction, and suggest that FIBI-derived vascular signatures, particularly when coupled with automated vessel segmentation, may provide informative input for future computational and artificial intelligence-based pathology models, and potentially clinical applications.

Indexed as

MicroscopyQuantitative image analysisSlide-free histologyTopological data analysisVasculature

Identifiers

PMID42656776
PMCPMC13507840

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.