Evidence map›Paper›PMID 42667239›Full record

ArticleCurrent protocols2026

Investigating Mitochondrial Bioenergetics in Intact Heart and Brain Tissue Slices.

Xavier R Chapa-Dubocq, Sukanya G Gakare, Walia Zahra, Meagan Donovan, Keishla M Rodriguez-Graciani, Tanner Hoole, Scott Edwards, Patricia E Molina, Michael C Salling, Janos Paloczi and 1 more

Abstract read
In one paragraph

Article in Current protocols, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xavier R Chapa-DubocqDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Sukanya G GakareDepartment of Cell Biology and Anatomy, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Walia ZahraDepartment of Pharmacology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Meagan DonovanDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Keishla M Rodriguez-GracianiDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Tanner HooleDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Scott EdwardsDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Patricia E MolinaDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Michael C SallingDepartment of Cell Biology and Anatomy, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Janos PalocziDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.
Liz SimonDepartment of Physiology, Comprehensive HIV/AIDS Alcohol Research Center, Louisiana State University Health Sciences Center New Orleans, New Orleans, Louisiana.

Funding

Translational Research/Education ComponentP60AA009803 · NIAAA · LSU HEALTH SCIENCES CENTER · PI PATRICIA E. MOLINA · 2004 to 2026
$42.6M
BIOMEDICAL ALCOHOL RESEARCH TRAINING PROGRAMT32AA007577 · NIAAA · LSU HEALTH SCIENCES CENTER · PI PATRICIA E. MOLINA · 1999 to 2026
$9.6M
Alcohol and dysfunctional skeletal muscle mass: implications in agingR21AA030869 · NIAAA · LSU HEALTH SCIENCES CENTER · PI SIMON, LIZ · 2023 to 2024
$402k
Alcohol Impact on Traumatic Brain Injury: Focus on Mitochondrial AlterationsF32AA031902 · NIAAA · LSU HEALTH SCIENCES CENTER · PI Xavier Ricardo Chapa Dubocq · 2024 to 2026
$114k
NIAAA NIH HHS F32 AA031902NIAAA NIH HHS F32AA031902NIAAA NIH HHS P60 AA009803NIAAA NIH HHS P60AA009803NIAAA NIH HHS R21 AA030869NIAAA NIH HHS R21AA030869NIAAA NIH HHS T32 AA007577NIAAA NIH HHS T32AA007577
6 · The paper itself

Abstract

Mitochondria are essential for maintaining the high energetic demands of the heart and brain, generating ATP required for contractile function, neuronal signaling, and ionic homeostasis. In both tissues, metabolic flexibility is critical for maintaining bioenergetic efficiency, redox balance, and cellular viability. Despite their importance, existing experimental approaches to assess mitochondrial bioenergetic function present notable limitations. Isolated mitochondria and permeabilized cell assays provide precise control over substrates and respiratory states but disrupt organelle integrity and remove native cellular and extracellular context. Conversely, measurements in isolated or cultured cells preserve intact mitochondria but introduce phenotypic and metabolic artifacts. These constraints highlight the need for an intermediate platform that preserves native tissue architecture and cellular diversity while enabling quantitative assessment of mitochondrial bioenergetics. Building on prior demonstrations of respiration measurements in intact cardiac and neural tissue, we describe a tissue punch-based approach that enables region-specific analysis of mitochondrial function in small ex vivo tissue slices of intact heart and brain. This method preserves cytoarchitecture, and intercellular interactions while remaining compatible with high-resolution Seahorse respirometry analysis. Tissue punches allow multiple technical replicates from individual organs, reduce variability associated with isolation procedures, and enable assessment of regional metabolic heterogeneity, such as atrial versus ventricular myocardium or discrete brain regions. Here we present detailed and reproducible workflow protocols for brain and cardiac tissue punch preparation and extracellular flux analysis, including guidance on sample acquisition, punch sizing, normalization strategies, and data interpretation, with considerations for adapting the protocols across multiple pre-clinical models. © 2026 Wiley Periodicals LLC. Support Protocol: Preparation, Reagent Setup, and Instrumentation Basic Protocol 1: Cardiac tissue preparation Basic Protocol 2: Brain tissue preparation: rodents Basic Protocol 3: Brain tissue preparation: nonhuman primates Basic Protocol 4: Placement of tissue punches on Seahorse organoid plate Basic Protocol 5: Mitochondrial respiration measurements Basic Protocol 6: Tissue disruption for total protein quantification.

Indexed as

BrainEnergy MetabolismMitochondriaMitochondria, HeartMyocardiumAnimalsMiceanimal modelsbioenergeticsbrain slicesheart slicesmitochondrial metabolismSeahorse XF analysistissue‐based respirometry

Identifiers

PMID42667239
PMCPMC13525717

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.