Evidence map›Paper›PMID 42673948›Full record

ArticleStructure (London, England : 1993)2026

Structures of the human sodium-citrate cotransporter NaCT with and without substrates.

David B Sauer, Jinmei Song, Jennifer J Marden, Bing Wang, Kate Sowerby, Joseph C Sudar, William J Rice, Da-Neng Wang

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

David B SauerDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA. Electronic address: david.sauer@cmd.ox.ac.uk.
Jinmei SongDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.
Jennifer J MardenDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.
Bing WangCryo-Electron Microscopy Core Facility, New York University School of Medicine, New York, NY 10016, USA.
Kate SowerbyDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.
Joseph C SudarDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA.
William J RiceDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA; Cryo-Electron Microscopy Core Facility, New York University School of Medicine, New York, NY 10016, USA. Electronic address: william.rice@nyulangone.org.
Da-Neng WangDepartment of Cell Biology, New York University School of Medicine, New York, NY 10016, USA. Electronic address: da-neng.wang@med.nyu.edu.

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
Transport Cycle and Inhibition of Human Na+-dicarboxylate Cotransporter NaDC3R01NS108151 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DANENG WANG · 2018 to 2026
$4.1M
Dynamics and mechanism of sodium-dependent carboxylate transportersR01DK135088 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Ruben L Gonzalez, Emad Tajkhorshid · 2023 to 2026
$2.6M
Structural basis of the Ragulator-Rag GTPase complex as a platform for mTOR activation on the lysosomal surfaceR01GM121994 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, DANENG · 2017 to 2020
$1.5M
NCI NIH HHS P30 CA016087NIDDK NIH HHS R01 DK135088NIGMS NIH HHS R01 GM121994NINDS NIH HHS R01 NS108151
6 · The paper itself

Abstract

The human sodium-citrate cotransporter NaCT imports various tri- and di-carboxylates into the cell as TCA cycle intermediates. This substrate uptake process is driven by an inward sodium gradient. The protein is a member of the divalent anion-sodium symporter (DASS) family. Whereas extensive biochemical and structural studies have been carried out for NaCT, how the substrate binding and translocation is coupled to the sodium gradient remains unclear. Here using single particle cryo-electron microscopy, we determined the structures of the human NaCT protein in three states: sodium-free, in the presence of sodium, and bound to sodium and a substrate mimicking inhibitor. These structures suggest a simultaneous binding mechanism for sodium-substrate coupling, distinct from the sequential binding, conformational selection mechanism previously observed for the bacterial DASS protein VcINDY.

Indexed as

SodiumSymportersBinding SitesCryoelectron MicroscopyHumansModels, MolecularProtein BindingSubstrate SpecificitySLC13A5 protein, humanSodiumSymporterscitratecotransporterSLC13A5sodium-substrate couplingtransporter dynamics

Identifiers

PMID42673948
PMCPMC13637752

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.