Evidence map›Paper›PMID 42679603›Full record

ArticleEBioMedicine2026

Cepheid 9-gene host mRNA expression across the spectrum of Mycobacterium tuberculosis infection and disease: insights across the lifespan.

Marva Seifert, Michael Gracia, Donald G Catanzaro, Faiqa Rashid, Rehan R Syed, Faisal Masood, Naomi Hillery, Alamdar Hussain, Ashley Swing, Rebecca E Colman and 4 more

Abstract read
In one paragraph

Article in EBioMedicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Marva SeifertDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: mseifert@ucsd.edu.
Michael GraciaDepartment of Pediatrics, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: m1gracia@health.ucsd.edu.
Donald G CatanzaroDepartment of Biological Sciences, University of Arkansas, 601 Science Engineering Hall, Fayetteville, AR, 72701, United States. Electronic address: dgcatanz@uark.edu.
Faiqa RashidNational Tuberculosis Control Program, National TB Reference Laboratory, CMU Offices, Block E and F, EPI Building, NIH Complex, Chak Shahzad, Islamabad, 44000, Pakistan. Electronic address: faiqarashid1@gmail.com.
Rehan R SyedDivision of Infectious Diseases and Global Public Health, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: rehan.r.syed@gmail.com.
Faisal MasoodNational Tuberculosis Control Program, National TB Reference Laboratory, CMU Offices, Block E and F, EPI Building, NIH Complex, Chak Shahzad, Islamabad, 44000, Pakistan. Electronic address: fmkhanzada@gmail.com.
Naomi HilleryDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: nhillery@health.ucsd.edu.
Alamdar HussainNational Tuberculosis Control Program, National TB Reference Laboratory, CMU Offices, Block E and F, EPI Building, NIH Complex, Chak Shahzad, Islamabad, 44000, Pakistan. Electronic address: alamdarhr@gmail.com.
Ashley SwingDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: amswing@health.ucsd.edu.
Rebecca E ColmanDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: rcolman@health.ucsd.edu.
Uzma MajeedNational Tuberculosis Control Program, National TB Reference Laboratory, CMU Offices, Block E and F, EPI Building, NIH Complex, Chak Shahzad, Islamabad, 44000, Pakistan. Electronic address: uzmalone@gmail.com.
Antonino CatanzaroDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: acatanzaro@health.ucsd.edu.
Sabira TahseenNational Tuberculosis Control Program, National TB Reference Laboratory, CMU Offices, Block E and F, EPI Building, NIH Complex, Chak Shahzad, Islamabad, 44000, Pakistan. Electronic address: sabira.tahseen@gmail.com.
Timothy C RodwellDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, United States. Electronic address: trodwell@ucsd.edu.

Funding

HOPE Training GrantT32AI007384 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Sara Gianella Weibel, Scott L Letendre · 1990 to 2026
$9.7M
Identifying individuals at risk of progression to active tuberculosisR01AI137681 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CATANZARO, ANTONINO, RODWELL, TIMOTHY CHARLES · 2018 to 2022
$3.7M
NIAID NIH HHS R01 AI137681NIAID NIH HHS T32 AI007384
6 · The paper itself

Abstract

backgroundNovel diagnostic solutions using host-response-based gene signatures to differentiate between individuals infected with Mycobacterium tuberculosis presenting with active tuberculosis disease (ATB), individuals infected with the bacterium in the absence of active tuberculosis disease (TBI), and individuals with no evidence of ATB or TBI (no TB) have demonstrated limited utility. However, the impact of age-related immunological changes on diagnostic performance remains unclear.

methodsUsing blood samples collected from 119 'adolescent/young adults' aged 10-24 years, 259 'adults' aged 25-55 years, and 79 'older adults' aged 56 years and above we explored differences in expression of eight gene targets using a novel research-use-only Cepheid Xpert TB/LTBI assay. We plotted relative expression for each gene by age stratified by TB status, then constructed two composite classifiers using a subset of gene targets. These composite classifiers were compared using AUCs derived from logistic regression models fitted within each age stratum.

findingsExpression of IL2, IFNG, and MIG appeared to best differentiate individuals who were classified as TBI or ATB from no TB and were used to construct an 'exposure' classifier which yielded an AUC of 0.89 (95% CI 0.83-0.96) among adolescent/young adults, 0.82 (95% CI 0.76-0.87) among adults, and 0.71 (95% CI 0.58-0.84) among older adults. Similarly, expression of SLPI, VEGFA, PLAU, and GBP5 appeared to best differentiate between individuals who were classified as ATB from TBI or no TB. The corresponding composite 'disease' classifier yielded an AUC of 0.88 (95% CI 0.80-0.96) among adolescent/young adults, 0.74 (95% CI 0.66-0.82) among adults, and 0.56 (95% CI 0.40-0.73) among older adults.

interpretationThis study demonstrates the importance of considering age in the development and evaluation of host-response-based diagnostics for ATB and TBI and suggests that host-response-based diagnostics may prove most useful in differentiation of ATB, TBI, and no TB among adolescent/young adults. FUNDINGS: This study was supported by the US Department of Defence (award number W81XWH-18-1-0253) and National Institutes of Health (award number R01AI137681). Salary support was received from the National Institutes of Health (training grant number T32AI007384).

Indexed as

Active tuberculosis diseaseAdolescents and young adultsDiagnosisHost-responseTuberculosis infection

Identifiers

PMID42679603
PMCPMC13570273

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.