Evidence map›Paper›PMID 42681472›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Image Analysis Approaches for In Situ Hybridization Technologies.

David Mason, Julia Jones

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

David MasonVisiopharm A/S, Agern Allé 24, 2970, Hoersholm, Denmark. dma@visiopharm.com.ORCID http://orcid.org/0000-0002-8773-5274
Julia JonesCancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In situ hybridisation (ISH) is an invaluable experimental technique when considering the holistic process of transcription through to translation. Without good tools to identify sequence-based structures within cells and tissues, researchers are left with only half of the story when looking at protein expression. While there are many experimental approaches, including a rainbow of chromogens and a choice of brightfield and fluorescent approaches, the Image Analysis of ISH-based experiments remains a significant block to many looking to explore these datasets. This chapter aims to highlight some of the considerations when approaching the image analysis of ISH experiments, as well as showing a step-by-step walkthrough for analysis using tools developed by Visiopharm, an industry leader in digital pathology image analysis with over 20 years of experience in the field.

Indexed as

Image Processing, Computer-AssistedIn Situ HybridizationAnimalsHumansMachine LearningChromogenIntensityISHMachine learningPixelPunctaRNA

Identifiers

PMID42681472

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.