Evidence map›Paper›PMID 42696019›Full record

ArticleThe ISME journal2026

Fungi associated with Norway spruce and its bark beetles detoxify spruce defense compounds by conjugation to α-ribose.

Shivani Kiran Nimbkar, Yoko Nakamura, Baoyu Hu, Benke Hong, Beate Rothe, Michael Reichelt, Maximilian Lehenberger, Guilin Hu, Julián D Restrepo-Leal, Xingcong Jiang and 2 more

Abstract read
In one paragraph

Article in The ISME journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shivani Kiran NimbkarDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Yoko NakamuraDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0002-9622-1005
Baoyu HuDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Benke HongDepartment of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0009-0000-7557-8278
Beate RotheDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Michael ReicheltDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0002-6691-6500
Maximilian LehenbergerDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0001-9097-9715
Guilin HuDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Julián D Restrepo-LealDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.
Xingcong JiangCentre for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200000, China.
Jonathan GershenzonDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0002-1812-1551
Ruo SunDepartment of Biochemistry, Max Planck Institute for Chemical Ecology, Jena 07745, Germany.ORCID 0000-0001-9861-6097

Funding

China Scholarship Council 202108520018Deutsche Forschungsgemeinschaft 520486374Max Planck SocietyNational Natural Science Foundation of China for the International Collaboration Fund for Creative Research Teams W2541009
6 · The paper itself

Abstract

Fungi readily colonize the inner bark (phloem) of spruce and other conifers despite these tissues having a high concentration of antifungal defense metabolites. These compounds include stilbenes, flavonoids, and other phenolic substances, mostly present as glucosides. Yet, the underlying biochemical mechanisms by which fungi resist conifer phenolics remain largely unresolved. Using untargeted metabolomics, structural elucidation and biological and biochemical assays, we investigated how and why fungi metabolize the major phenolics of Norway spruce (Picea abies). Various fungi, including those associated with bark beetles, were found to hydrolyze stilbene glucosides to their corresponding aglucones. Two basidiomycetes, the saprotroph Coprinellus radians and Cylindrobasidium ipidophilum, a symbiont of the Eurasian spruce bark beetle Ips typographus, then converted the stilbene aglucones into α-ribofuranosylated derivatives, revealing a previously unrecognized pathway in tree-colonizing fungi. Ribosylation markedly reduced the antifungal activity of the aglucones and stabilized them against hydrolysis by fungal and I. typographus enzymes, preventing regeneration of the toxic aglucones. Ribosylation was also correlated with increased growth on spruce bark-containing medium. Hence, the ability to overcome major conifer bark defenses by conversion of toxic stilbene aglucones to non-toxic α-ribosides may explain the successful colonization of this tissue by fungi, some of which support I. typographus attack.

Indexed as

BasidiomycotaColeopteraFungiPiceaAnimalsGlucosidesPhenolsPlant BarkStilbenesGlucosidesPhenolsStilbenesdetoxificationIps typographus symbiontsNorway spruce treephenolic compoundsplant chemical defensetree associated fungi

Identifiers

PMID42696019
PMCPMC13637821

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.