Evidence map›Paper›PMID 42697891›Full record

ArticleNature communications2026

Cryo-EM structures of the SurA-BAM complex reveal conformational changes in outer membrane protein assembly.

Ryoji Miyazaki, Hidetaka Kohga, Nami Matsuoka, Yuki Maruno, Wataru Yoshimoto, Yutaro S Takahashi, Dede Heri Yuli Yanto, Yudhi Nugraha, Hideki Shigematsu, Takuya Shiota and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ryoji MiyazakiNara Institute of Science and Technology, Ikoma, Nara, Japan. m.ryoji@naist.ac.jp.ORCID http://orcid.org/0000-0003-1626-2569
Hidetaka Kohga *Nara Institute of Science and Technology, Ikoma, Nara, Japan.ORCID http://orcid.org/0000-0003-1187-5016
Nami Matsuoka *Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Yuki MarunoInterdisciplinary Graduate School of Agriculture and Engineering, University of Miyazaki, 1-1 Gakuen-Kibanadai Nishi, Miyazaki, Japan.ORCID http://orcid.org/0009-0001-4905-0602
Wataru YoshimotoNara Institute of Science and Technology, Ikoma, Nara, Japan.
Yutaro S TakahashiNara Institute of Science and Technology, Ikoma, Nara, Japan.
Dede Heri Yuli YantoResearch Center for Applied Microbiology, National Research and Innovation Agency (BRIN), Cibinong, Bogor, West Java, Indonesia.
Yudhi NugrahaResearch Center for Molecular Biology Eijkman, National Research and Innovation Agency (BRIN), Cibinong, Bogor, West Java, Indonesia.ORCID http://orcid.org/0000-0003-1186-4093
Hideki ShigematsuDiffraction and Scattering Division, Japan Synchrotron Radiation Research Institute, Sayo, Hyogo, Japan.ORCID http://orcid.org/0000-0003-3951-8651
Takuya ShiotaFrontier Science Research Center, University of Miyazaki, Miyazaki, Japan.ORCID http://orcid.org/0000-0003-3004-4541
Tomoya TsukazakiNara Institute of Science and Technology, Ikoma, Nara, Japan. tsukazaki.tomoya@naist.ac.jp.ORCID http://orcid.org/0000-0002-6386-723X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The outer membrane (OM) of Gram-negative bacteria acts as a permeability barrier against toxic compounds. Its integrity is maintained by various outer membrane proteins (OMPs), which are inserted into the OM by the β-barrel assembly machinery (BAM) complex. The periplasmic chaperone SurA delivers unfolded OMPs to BAM; however, the mechanism of substrate transfer remains unclear. Here, we show that the flexible P1 and P2 domains of SurA regulate the function of its Core domain and interact with BAM components, including BamE, whose interaction with the P2 domain is crucial for efficient OMP assembly. Moreover, cryo-electron microscopy reveals four distinct Escherichia coli SurA-BAM structures, suggesting dynamic domain rearrangements of SurA. Based on these findings, we propose a dynamic model in which SurA transfers substrates to BAM through multiple conformational changes, providing a unified framework for chaperone-assisted OMP biogenesis.

Indexed as

Bacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsPeptidylprolyl IsomeraseCarrier ProteinsCryoelectron MicroscopyModels, MolecularMolecular ChaperonesProtein BindingProtein ConformationProtein DomainsBacterial Outer Membrane ProteinsBamA protein, E coliCarrier ProteinsEscherichia coli ProteinsMolecular ChaperonesPeptidylprolyl IsomeraseSurA protein, E coli

Identifiers

PMID42697891
PMCPMC13545206

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.