Evidence map›Paper›PMID 42709282›Full record

ReviewBiodegradation2026

Decoding next-generation heavy metal bioremediation via species-specific Earthworm and its gut microbiome interactions: insights from molecular responses, multi-omics, synthetic biology, and artificial intelligence.

Inrikynti Mary Kharmawphlang, María Gómez-Brandón, Nazneen Hussain

Abstract readReview
PubMed Publisher
In one paragraph

Review in Biodegradation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Inrikynti Mary KharmawphlangDepartment of Biosciences (Biochemistry), Assam Don Bosco University, Sonapur, Assam, 782402, India.
María Gómez-BrandónGrupo de Ecología Animal (GEA), University of Vigo, 36310, Vigo, Galicia, Spain.
Nazneen HussainDepartment of Biosciences, Assam Don Bosco University, Sonapur, Assam, 782402, India. hnazneen28@gmail.com.ORCID https://orcid.org/0000-0003-4088-4501

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heavy metal (HM) contamination represents a persistent global threat, demanding bioremediation strategies that are both mechanistically robust and ecologically sustainable. This review provides a next-generation perspective on vermiremediation by integrating species-level physiology, gut microbiome functionality, molecular detoxification pathways, synthetic biology innovations, multi-omics insights, and artificial intelligence (AI)-driven modeling into a unified framework. A central novelty of this work lies in the detailed elucidation of earthworm-microbe consortia and their synergistic contributions to metal sequestration, transformation, and detoxification-moving beyond traditional organism-centric views toward eco-engineered host-symbiont systems. We synthesize species-specific bioaccumulation patterns, toxicological responses, and detoxification mechanisms, supported by enrichment kinetic models. At the molecular scale, we highlight antioxidant defense pathways involving catalase, glutathione-S-transferase, and superoxide dismutase, alongside oxidative stress signaling, macromolecular damage, and thresholds that differentiate adaptive resilience from system failure. Advancements in synthetic biology includes gene editing, pathway reconstruction, and designer symbiotic microbes which are examined as emerging tools to enhance gut microbial functionality and engineer targeted metal-binding pathways. Multi-omics approaches provide a systems-level view of detoxification networks, revealing previously uncharacterized genes, enzymes, and metabolic signatures associated with HM tolerance and early biomarkers of sub-lethal stress. The incorporation of AI-based models introduces a data-driven dimension, enabling accurate prediction of remediation outcomes and optimization of vermiremediation strategies. Overall, this review advances vermiremediation from an empirical practice to a programmable, systems-biotechnology platform for sustainable HM bioremediation.

Indexed as

Gastrointestinal MicrobiomeMetals, HeavyOligochaetaSoil PollutantsAnimalsArtificial IntelligenceBiodegradation, EnvironmentalMultiomicsSynthetic BiologyMetals, HeavySoil PollutantsAI modellingEarthworm-microbiome consortiaHeavy metal detoxificationMulti-omics and synthetic biologySpecies-specific bioaccumulation

Identifiers

PMID42709282

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.