Evidence map›Paper›PMID 42709486›Full record

ArticleScience progress

Exploring candidate biomarkers for nonobstructive azoospermia: A bioinformatics and machine learning approach.

Mingming Liang, Yan Chi, Hong Pan, Chengqi Wu, Jinjiang Zeng, Weiyou Lv, Xi Luo

Abstract read
In one paragraph

Article in Science progress. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mingming LiangCenter of Reproductive Medicine, Guangzhou Women and Children's Medical Center Liuzhou Hospital, Guangxi, China.
Yan ChiCenter for Reproductive Medicine and Genetics, The People's Hospital of Guangxi Zhuang Autonomous Region, Nanning, China.
Hong PanGuangxi Academy of Medical Sciences, The People's Hospital of Guangxi Zhuang Autonomous Region, Guangxi Key Laboratory of Eye Health, Nanning, China.
Chengqi WuCenter of Reproductive Medicine, Guangzhou Women and Children's Medical Center Liuzhou Hospital, Guangxi, China.
Jinjiang ZengCenter of Reproductive Medicine, Guangzhou Women and Children's Medical Center Liuzhou Hospital, Guangxi, China.
Weiyou LvCenter of Reproductive Medicine, Guangzhou Women and Children's Medical Center Liuzhou Hospital, Guangxi, China.
Xi LuoGuangxi Academy of Medical Sciences, The People's Hospital of Guangxi Zhuang Autonomous Region, Guangxi Key Laboratory of Eye Health, Nanning, China.ORCID 0000-0003-3872-7427

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ObjectiveNonobstructive azoospermia (NOA), a severe male reproductive disorder, has a complex pathogenesis. This study aimed to identify novel oxidative stress potential biomarkers for NOA using bioinformatics.MethodsDatasets GSE9210, GSE108886, and GSE45885 from the GEO database were used for training, while GSE145467 supported weighted gene coexpression network analysis. The limma package identified differentially expressed genes, cross-referenced with oxidative stress genes from GeneCards for drug prediction. Three machine learning algorithms identified potential hub genes, validated by GSE45887 and GSE216907. Advanced analyses focused on these hub genes, including regulatory networks and single-gene enrichment studies. qRT-PCR validated hub gene expression, and single-cell RNA sequencing (GSE149512 and GSE202647) explored cellular expression patterns.Results

Indexed as

AzoospermiaBiomarkersComputational BiologyMachine LearningGene Expression ProfilingGene Regulatory NetworksHumansMaleOxidative StressBiomarkersbioinformatics analysismachine learning algorithmsmale infertilitynon obstructive azoospermiatranscriptome analysis

Identifiers

PMID42709486
PMCPMC13554629

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.