Evidence map›Paper›PMID 42713409›Full record

ArticleBJUI compass2026

Machine-learning prediction of urine-culture positivity in a multicentre test-ordered cohort: Model development and internal validation.

Isaac Samir Wasfy, Jamal Ahmad, Hany Elsegeay, Mohamed F Elebiary, Ahmed Haty, Eman M El-Dydamony, Ahmed Mohamed Soliman, Ahmed Alrefaey, Hesham Abozied, Mohamed Algammal and 5 more

Abstract read
In one paragraph

Article in BJUI compass, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Isaac Samir WasfyUrology Department, Faculty of Medicine Suez Canal University Ismailia Egypt.
Jamal AhmadCollege of Medicine and Health Sciences Palestine Polytechnic University Hebron Palestine.ORCID https://orcid.org/0009-0008-3719-4538
Hany ElsegeayUrology Department, Faculty of Medicine Al-Azhar University Asyut Egypt.ORCID https://orcid.org/0009-0006-8111-553X
Mohamed F ElebiaryUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.ORCID https://orcid.org/0009-0007-5704-3916
Ahmed HatyUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.ORCID https://orcid.org/0000-0002-3913-209X
Eman M El-DydamonyUrology Department, Faculty of Medicine for Girls Al-Azhar University Cairo Egypt.ORCID https://orcid.org/0000-0002-8272-0604
Ahmed Mohamed SolimanUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.
Ahmed AlrefaeyUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.
Hesham AboziedUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.ORCID https://orcid.org/0000-0001-8373-930X
Mohamed AlgammalUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.ORCID https://orcid.org/0009-0002-0472-4914
Hossam A ShoumanUrology Department, Faculty of Medicine Al-Azhar University Cairo Egypt.
Maha M ElzamekUrology Department, Faculty of Medicine for Girls Al-Azhar University Cairo Egypt.
Ahmed Abdel Galil SalehUrology Department, Faculty of Medicine Fayoum University El-Fayoum Egypt.
Ahmed Fetyan Abdelazim ShafiUrology Department, Faculty of Medicine Fayoum University El-Fayoum Egypt.
Osama Mostafa Abdalla MohamedUrology Department, Faculty of Medicine Fayoum University El-Fayoum Egypt.ORCID https://orcid.org/0009-0005-0755-3518

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: This study aim to develop, compare and internally validate machine-learning models for predicting urine-culture positivity in patients who had both urinalysis and culture ordered and to explore descriptive probability strata. Post hoc secondary analyses examined age subgroups, the incremental contribution of text-derived features, simpler comparators and calibration. Patients and Methods: Urine culture results are typically unavailable for 24-72 h, creating uncertainty during initial assessment, and machine-learning models may help estimate the probability of culture positivity from routinely collected data. This retrospective study included 2530 urine-sample records originating from three university hospitals. Eligibility was based on paired urinalysis and urine culture records rather than symptom-based diagnostic criteria for urinary tract infection (UTI). Thirteen supervised algorithms were evaluated using a stratified 75:25 sample-record split. This constituted internal validation; records were not grouped by patient or centre because stable cross-centre patient, centre and collection-date identifiers were unavailable. Results: Several gradient-boosting algorithms showed similar discrimination. CatBoost had the numerically highest test-set AUC of 0.858 (95% CI 0.829-0.892), but its AUC did not differ significantly from gradient boosting or XGBoost. At the reported operating threshold, sensitivity was 0.587 (95% CI 0.513-0.662), specificity 0.930 (0.903-0.951), PPV 0.766 (0.693-0.833) and NPV 0.851 (0.821-0.882). Exploratory probability strata separated records with different observed rates of culture positivity, but their clinical utility and safety were not evaluated. Conclusion: Machine-learning models discriminated between culture-positive and culture-negative sample records in a sample-level internal validation. Culture positivity is not synonymous with symptomatic or clinically significant UTI. The findings support further evaluation as diagnostic risk-estimation tools after urinalysis results are available. They do not establish clinical UTI or the safety or effectiveness of starting, withholding or delaying antibiotics. Patient-grouped external validation with clinical outcomes is required before clinical use.

Indexed as

antibiotic stewardshipclinical decision support systemmachine learningnatural language processing (NLP)predictive modellingurinary tract infection (UTI)urine culture

Identifiers

PMID42713409
PMCPMC13552025

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.