Evidence map›Paper›PMID 42736371›Full record

ArticleNature communications2026

Estimating genetic correlation jointly using individual-level and summary-level GWAS data.

Yiliang Zhang, Wei Jiang, Jiangnan Shen, Youshu Cheng, Yixuan Ye, Qiongshi Lu, Hongyu Zhao

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Estimating trans-ancestry genetic correlation with unbalanced data resources.Journal of the American Statistical Association · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yiliang Zhang *Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-9851-7870
Wei Jiang *Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-6120-5278
Jiangnan Shen *Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA.
Youshu ChengDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, USA.ORCID http://orcid.org/0009-0006-6398-2082
Yixuan YeProgram of Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-2643-665X
Qiongshi LuDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-4514-0969
Hongyu ZhaoDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, USA. hongyu.zhao@yale.edu.ORCID http://orcid.org/0000-0003-1195-9607

Funding

Multiethnic Cohort Study of Diet and CancerR37CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 2003 to 2012
$23.2M
VALIDATION OF A DIET HISTORY METHOD FOR EPIDEMIOLOGIC STUDIES OF CANCERP01CA033619 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 1985 to 2010
$18.5M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098758 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2003 to 2010
$11.0M
A Genome-wide Association Study of Prostate Cancer in African AmericansU01CA136792 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2009 to 2011
$9.4M
Epidemiology of Putative Causal Variants in the Multiethnic CohortU01HG004802 · NHGRI · UNIVERSITY OF HAWAII AT MANOA · PI LE MARCHAND, LOIC · 2008 to 2012
$8.4M
NHGRI EpiGenVar Coordinating CenterU01HG004801 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI MATISE, TARA C. · 2008 to 2012
$4.4M
Statistical Methods for Genetic Risk Predictions across Diverse PopulationsR01HG012735 · NHGRI · YALE UNIVERSITY · PI ZHAO, HONGYU · 2022 to 2025
$2.4M
NCI NIH HHS P01 CA033619NCI NIH HHS R37 CA054281NCI NIH HHS U01 CA098758NCI NIH HHS U01 CA136792NHGRI NIH HHS R01 HG012735NHGRI NIH HHS U01 HG004801NHGRI NIH HHS U01 HG004802U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R01 HG012735Wellcome Trust
6 · The paper itself

Abstract

With increasing access to individual-level data from genome-wide association studies, it is now common for researchers to have individual-level data of some traits, whereas for other traits only publicly released summary statistics are available due to privacy and safety concerns. Current genetic-correlation methods require both traits to be in the same format. When one trait has individual-level data and the other has only summary statistics, researchers often convert individual-level data to summary statistics and then apply summary-based methods, which is inefficient and can lose information. Here we introduce GENJI, a method for estimating within-population or transethnic genetic correlation based on individual-level data for one trait and summary-level data for the other. Across extensive simulations and real data analyses, GENJI produces more reliable and efficient estimation than summary data-based methods. We further show that more accurate genetic correlation estimation can improve cross-population polygenic risk prediction.

Indexed as

Genome-Wide Association StudyComputer SimulationGenetic Risk ScoreHumansModels, GeneticMultifactorial InheritancePolymorphism, Single Nucleotide

Identifiers

PMID42736371
PMCPMC13574770

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.