Evidence map›Paper›PMID 42768027›Full record

ArticleNature communications2026

A case study of evolutionary variability and determinism among type III polyketide synthases.

Ya-Hui Chen, Yijun Yan, Tian Tian, Qin Tian, Jing Yang, Yin Chen, Yong-Jiang Wang, Rhianah Sandean, Gabriela Šrámková, Marcus A Koch and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ya-Hui Chen *Institute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Yijun Yan *State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.ORCID http://orcid.org/0000-0001-7727-8084
Tian Tian *State Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Qin TianCollege of Forestry, Shandong Agricultural University, Taian, China.ORCID http://orcid.org/0000-0002-7939-5329
Jing YangInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Yin ChenInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.ORCID http://orcid.org/0000-0002-0794-0922
Yong-Jiang WangInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Rhianah SandeanDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.
Gabriela ŠrámkováDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.ORCID http://orcid.org/0000-0002-7439-2911
Marcus A KochCentre for Organismal Studies, Heidelberg University, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-1693-6829
Levi YantDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.ORCID http://orcid.org/0000-0003-3442-0217
Lingping ZhuInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Shilin ChenInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.ORCID http://orcid.org/0000-0002-0449-236X
Jian-Ping HuangInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China. huangjianping@mail.kib.ac.cn.ORCID http://orcid.org/0000-0003-1828-0517
Sheng-Xiong HuangInstitute of Herbgenomics and Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China. sxhuang@mail.kib.ac.cn.ORCID http://orcid.org/0000-0002-3616-8556

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82225043
6 · The paper itself

Abstract

Repeated evolution of the same enzymatic activity represents a powerful model of determinism across diverse lineages, yet its underlying evolutionary trajectories remain poorly understood. Here we identified three 3-oxo-glutaric acid (OGA)-forming type III polyketide synthases (PKSs) from Brassicaceae plants through in vitro enzyme assays. Structure-function analysis combined with comparative genomics indicates a strong correlation between OGA- and triacetic acid lactone (TAL)-forming activities during the evolution of these PKSs. An evolutionary change in a key active-site residue enables a functional switch from TAL-forming activity to OGA-forming activity. Intriguingly, further chalcone synthase activity assays and expanded exploration of PKSs from additional plant lineages suggest that OGA-forming PKSs may have evolved repeatedly from the intrinsic TAL-forming activity of chalcone synthases in a lineage-specific manner. This evolutionary feature may help explain the recurrent emergence of OGA-forming PKSs in vascular plants and provide insight into the trajectories underlying the independent evolution of homologous isoenzymes in plants.

Indexed as

AcyltransferasesPlant ProteinsPolyketide SynthasesBrassicaceaeEvolution, MolecularPhylogenyAcyltransferasesflavanone synthetasePlant ProteinsPolyketide Synthases

Identifiers

PMID42768027
PMCPMC13594104

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.