Evidence map›Paper›PMID 42779741›Full record

ArticlebioRxiv : the preprint server for biology2026

Systematic Engineering of Loss-of-Function Alleles in the Zebrafish Mitochondrial Proteome.

Ankit Sabharwal, Md Roushan Ali, Kyler S Mitra, Jun Morisue, Jace Klein, Rishav Sarkar, Kaila Savage, Lucy Rai Thulung, Amanda Zumbrock, Cassidy Petree and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ankit SabharwalDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0000-0003-4355-0355
Md Roushan AliDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0000-0002-8894-2566
Kyler S MitraDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0009-0000-0258-5987
Jun MorisueMitochondrial Medicine Frontier Program, Division of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0009-0005-0219-1984
Jace KleinDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0009-0007-6732-2572
Rishav SarkarDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0009-0002-7152-2044
Kaila SavageDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.
Lucy Rai ThulungDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0009-0000-6402-4739
Amanda ZumbrockDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.
Cassidy PetreeGenes & Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, USA.ORCID 0000-0002-9379-2400
Santiago Restrepo CastilloDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0000-0001-7881-1813
Mireya MotaDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0000-0002-7105-516X
Gaurav K VarshneyGenes & Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, USA.ORCID 0000-0002-0429-1904
Karl J ClarkDepartment of Animal Science, Texas A&M University, College Station, Texas, USA.ORCID 0000-0002-9637-0967
Eiko Nakamuru-OgisoMitochondrial Medicine Frontier Program, Division of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0009-0003-2223-5628
Stephen C EkkerDepartment of Pediatrics, Dell Pediatric Research Institute, Dell Medical School, The University of Texas at Austin, Texas, USA.ORCID 0000-0003-0726-4212

Funding

Systematic Vertebrate Functional GenomicsR01GM063904 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EKKER, STEPHEN CARL · 2001 to 2025
$10.7M
Modeling mtDNA Disease in vivoR24OD035577 · OD · UNIVERSITY OF TEXAS AT AUSTIN · PI Stephen Carl Ekker · 2024 to 2026
$1.9M
Development of scalable methods for rapid phenotyping and functional testing of variantsR24OD034438 · OD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI Gaurav K Varshney · 2024 to 2026
$1.8M
Systematic Vertebrate Functional GenomicsR56GM063904 · NIGMS · MAYO CLINIC ROCHESTER · PI EKKER, STEPHEN CARL · 2009 to 2010
$611k
NIGMS NIH HHS R01 GM063904NIGMS NIH HHS R56 GM063904NIH HHS R24 OD034438NIH HHS R24 OD035577
6 · The paper itself

Abstract

Pathogenic variants in the 13 protein-coding genes of the mitochondrial genome underlie clinically and biochemically heterogeneous disorders. Most mtDNA-encoded genes lack defined loss-of-function (LOF) models

Indexed as

DdCBEMitochondriamitochondrial base editingmitochondrial DNAzebrafishZ-Terminator

Identifiers

PMID42779741
PMCPMC13596318

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.